PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010873-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 410aa    MW: 45306.7 Da    PI: 4.7811
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010873-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.1e-1166112554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +  rE+ RRdr+N+ f+ L ++l +    +  K +K++iL  A++ +++L
  NNU_010873-RA  66 KACREKMRRDRMNDMFSDLTSILEPG---RPAKTDKSAILGDAIRVLNQL 112
                    678**********************8...89****************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.22761112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-865117No hitNo description
SuperFamilySSF474592.75E-1266128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-866112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-967118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-1268122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.80.10.106.1E-43123307IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520588.75E-36130305IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDSFQDSSWN LLDYSIIEDG TSTDFYWNNQ DCCLDFDVSP IESILQEKAC TRKRGRNESC  60
SGPGSKACRE KMRRDRMNDM FSDLTSILEP GRPAKTDKSA ILGDAIRVLN QLRTEAQELK  120
DANEKLQEDI KNLKLVGVLP KSLNNLQFLA YLDVSSNRLE GKIKLGGSGS CRNLQELVLT  180
YNQFNGEIPS GLGNCSGLIF LAALGNKLTG QIPSSFGLLT KLELLYLNEN SLSAVIPPEI  240
GTCSSLKELL LQKNQLEGKI PSELGSLSKL EELALFTNRL TGEIPTLKYL SVYQNNLSGE  300
LPLEIPTLNV SDDEAGKGPN AAEALRAQAE KNELREEKLL LKADKERMEQ QLKTMSIMPT  360
GFVPPVPATY QAGANKLMTY PSFGGFPMWQ WIPPAVLDTS QDHVLRPPVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4mna_A5e-2712232650619LRR receptor-like serine/threonine-protein ki
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262298.12e-92PREDICTED: transcription factor bHLH104-like
TrEMBLA0A0J8ELA81e-56A0A0J8ELA8_BETVU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23210.15e-33bHLH family protein